Format

Download Assemblies

Send to:

Choose Destination

NCBI36

Organism name:
Homo sapiens (human)
Submitter:
International Human Genome Sequencing Consortium
Date:
2006/03/03
Synonyms:
hg18
Assembly type:
haploid-with-alt-loci
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
n/a
RefSeq assembly accession:
GCF_000001405.12 (replaced)
RefSeq assembly and GenBank assembly identical:
n/a

IDs: 2928 [UID] 2928 [RefSeq]

See Genome Information for Homo sapiens

There are 62 assemblies for this organism

See more

History (Show revision history)

Global statistics

Number of regions with alternate loci or patches4
Total sequence length3,104,054,490
Total assembly gap length222,487,605
Gaps between scaffolds301
Number of scaffolds378
Scaffold N5038,509,590
Scaffold L5025
Number of contigs1,037
Contig N5038,509,590
Contig L5025
Total number of chromosomes and plasmids24

Supplemental Content

PubMed articles for this assembly

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
c6_COX
c6_QBL
c22_H2
c5_H2
DR53

Regions

NameLocation
PAR#1X:1-2709520
PAR#2X:154584238-154913754
PAR#1Y:1-2709520
PAR#2Y:57443438-57772954
Assembly Unit: Primary Assembly (GCF_000001305.12)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1n/an/aNC_000001.910
Chromosome 2n/an/aNC_000002.101
Chromosome 3n/an/aNC_000003.104
Chromosome 4n/an/aNC_000004.105
Chromosome 5n/an/aNC_000005.81
Chromosome 6n/an/aNC_000006.102
Chromosome 7n/an/aNC_000007.123
Chromosome 8n/an/aNC_000008.98
Chromosome 9n/an/aNC_000009.107
Chromosome 10n/an/aNC_000010.91
Chromosome 11n/an/aNC_000011.83
Chromosome 12n/an/aNC_000012.100
Chromosome 13n/an/aNC_000013.91
Chromosome 14n/an/aNC_000014.70
Chromosome 15n/an/aNC_000015.85
Chromosome 16n/an/aNC_000016.81
Chromosome 17n/an/aNC_000017.917
Chromosome 18n/an/aNC_000018.81
Chromosome 19n/an/aNC_000019.82
Chromosome 20n/an/aNC_000020.90
Chromosome 21n/an/aNC_000021.79
Chromosome 22n/an/aNC_000022.92
Chromosome Xn/an/aNC_000023.95
Chromosome Yn/an/aNC_000024.80

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule3,093,104,5423672,870,618,79638,509,590657301
Chromosome 1AllAssembled moleculeUnlocalized scaffolds248,462,984247,249,7191,213,265493910226,204,084224,999,7191,204,36556,413,06156,413,061145,1868908942420
Chromosome 2AllAssembled moleculeUnlocalized scaffolds243,136,720242,951,149185,57119181237,895,369237,709,798185,57168,373,98068,373,980185,57133018180
Chromosome 3AllAssembled moleculeUnlocalized scaffolds200,101,083199,501,827599,256954195,304,083194,704,827599,256100,530,253100,530,253146,010000770
Chromosome 4AllAssembled moleculeUnlocalized scaffolds191,915,711191,273,063642,64819145187,939,711187,297,063642,64823,438,00923,438,009189,78900014140
Chromosome 5AllAssembled moleculeUnlocalized scaffolds181,001,553180,857,866143,687761177,846,453177,702,766143,68741,199,37141,199,371143,687000770
Chromosome 6AllAssembled moleculeUnlocalized scaffolds172,725,554170,899,9921,825,5621192169,096,754167,273,9921,822,76248,945,89048,945,8901,305,2302802811110
Chromosome 7AllAssembled moleculeUnlocalized scaffolds159,271,083158,821,424449,65915123155,401,283154,952,424448,85947,690,38247,690,382153,95980812120
Chromosome 8AllAssembled moleculeUnlocalized scaffolds146,868,636146,274,826593,81018108143,203,485142,612,826590,65938,454,50238,454,502183,16159158990
Chromosome 9AllAssembled moleculeUnlocalized scaffolds141,119,686140,273,252846,43446397120,983,627120,143,252840,37539,653,68639,653,686173,4435805842420
Chromosome 10AllAssembled moleculeUnlocalized scaffolds135,488,012135,374,737113,27519181131,735,790131,624,737111,05330,112,61330,112,613113,2752302320200
Chromosome 11AllAssembled moleculeUnlocalized scaffolds134,567,678134,452,384115,2941183131,245,847131,130,753115,09438,509,59038,509,59039,615312880
Chromosome 12Assembled molecule132,349,5347130,303,03432,815,93438
Chromosome 13AllAssembled moleculeUnlocalized scaffolds114,329,838114,142,980186,85865195,746,83895,559,980186,85867,740,32567,740,325186,858000880
Chromosome 14Assembled molecule106,368,585188,290,58588,290,58503
Chromosome 15AllAssembled moleculeUnlocalized scaffolds100,923,261100,338,915584,3461611581,920,10381,341,915578,18853,619,96553,619,965139,2605005012120
Chromosome 16AllAssembled moleculeUnlocalized scaffolds88,932,73988,827,254105,48565178,990,18978,884,754105,43542,003,58242,003,582105,485101660
Chromosome 17AllAssembled moleculeUnlocalized scaffolds80,592,35578,774,7421,817,61327101779,608,58177,800,2201,808,36121,163,83321,163,833147,354166016610100
Chromosome 18AllAssembled moleculeUnlocalized scaffolds76,121,41576,117,1534,26265174,660,41774,656,1554,26220,074,19920,074,1994,262000440
Chromosome 19AllAssembled moleculeUnlocalized scaffolds64,063,50963,811,651251,85864256,037,50955,785,651251,85831,383,02931,383,029159,169000770
Chromosome 20Assembled molecule62,435,964659,505,25326,144,33306
Chromosome 21AllAssembled moleculeUnlocalized scaffolds48,224,01646,944,3231,279,693134935,449,43134,169,9381,279,49328,617,42928,617,429158,069972550
Chromosome 22AllAssembled moleculeUnlocalized scaffolds49,898,75049,691,432207,318119235,058,65034,851,332207,31823,276,30223,276,302166,56600012120
Chromosome XAllAssembled moleculeUnlocalized scaffolds156,432,922154,913,7541,519,16822175152,538,766151,058,7541,480,01227,718,69227,718,6921,005,289157015716160
Chromosome YAssembled molecule57,772,9541725,652,9546,265,435014
Region
Name
LocationScaffold
Count
Total
Length
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unit NameScaffold
Count
Total
Length
Ungapped
Length
Scaffold
N50
Spanned
Gaps
c6_COX14,731,6984,731,6984,731,6980
c6_QBL64,249,2724,249,272623,9920
c22_H2163,66163,66163,6610
c5_H221,754,8701,753,0111,146,08820
DR531150,447150,447150,4470
Support Center