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Ocorymbosa-M15.v1

Organism name:
Oldenlandia corymbosa var. corymbosa (eudicots)
BioSample:
SAMEA110177292
BioProject:
PRJEB50026
Submitter:
nanyang technological university
Date:
2023/04/07
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_949775105.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CATKSE01
Assembly method:
NextDenovo
Genome coverage:
60x
Sequencing technology:
Illumina HiSeq 1000,PromethION

IDs: 16582031 [UID] 42660608 [GenBank]

See Genome Information for Oldenlandia corymbosa

History (Show revision history)

Comment

Genome assembly of Oldenlandia corymbosa

Global statistics

Total sequence length274,122,679
Total ungapped length274,122,679
Gaps between scaffolds0
Number of scaffolds12
Scaffold N5031,012,112
Scaffold L504
Number of contigs12
Contig N5031,012,112
Contig L504
Total number of chromosomes and plasmids11
Number of component sequences (WGS or clone)12

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_949775104.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1OX459118.1n/an/a0
Chromosome 2OX459119.1n/an/a0
Chromosome 3OX459120.1n/an/a0
Chromosome 4OX459121.1n/an/a0
Chromosome 5OX459122.1n/an/a0
Chromosome 6OX459123.1n/an/a0
Chromosome 7OX459124.1n/an/a0
Chromosome 8OX459125.1n/an/a0
Chromosome 9OX459126.1n/an/a1

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule273,711,99110273,711,99131,012,11200
Chromosome 1Assembled molecule40,728,208140,728,20840,728,20800
Chromosome 2Assembled molecule36,956,002136,956,00236,956,00200
Chromosome 3Assembled molecule33,986,793133,986,79333,986,79300
Chromosome 4Assembled molecule31,012,112131,012,11231,012,11200
Chromosome 5Assembled molecule29,528,993129,528,99329,528,99300
Chromosome 6Assembled molecule28,835,606128,835,60628,835,60600
Chromosome 7Assembled molecule27,831,323127,831,32327,831,32300
Chromosome 8Assembled molecule25,533,221125,533,22125,533,22100
Chromosome 9AllAssembled moleculeUnlocalized scaffolds19,299,73317,871,7571,427,97621119,299,73317,871,7571,427,97617,871,75717,871,7571,427,976000000
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All410,6882410,688258,27400
Mitochondrion MIT258,2741258,274258,27400
Plastid PLA152,4141152,414152,41400