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ilZelHepa1.1

Organism name:
Zelleria hepariella (moths)
BioSample:
SAMEA7746627
BioProject:
PRJEB60247
Submitter:
WELLCOME SANGER INSTITUTE
Date:
2023/04/08
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_949319315.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CASGHI01
Assembly method:
various
Genome coverage:
35x
Sequencing technology:
PacBio,Arima2
Linked assembly:
GCA_949319205.1 (alternate pseudohaplotype of diploid)

IDs: 16568631 [UID] 42617808 [GenBank]

See Genome Information for Zelleria hepariella

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The assembly ilZelHepa1.1 is based on 35x PacBio data and Arima2 Hi-C data generated by the Darwin Tree of Life Project
(https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation ... with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. Finally, the primary assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Z chromosome identified based on synteny with Yponomeuta sedellus (GCA_934045075.1).  more

Global statistics

Total sequence length428,786,765
Total ungapped length428,643,765
Gaps between scaffolds0
Number of scaffolds181
Scaffold N5024,231,187
Scaffold L507
Number of contigs896
Contig N501,033,269
Contig L50133
Total number of chromosomes and plasmids20
Number of component sequences (WGS or clone)181

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_949319314.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1OX439378.1n/an/a0
Chromosome 2OX439380.1n/an/a0
Chromosome 3OX439381.1n/an/a0
Chromosome 4OX439382.1n/an/a0
Chromosome 5OX439383.1n/an/a0
Chromosome 6OX439384.1n/an/a0
Chromosome 7OX439385.1n/an/a0
Chromosome 8OX439386.1n/an/a0
Chromosome 9OX439387.1n/an/a0
Chromosome 10OX439388.1n/an/a0
Chromosome 11OX439389.1n/an/a0
Chromosome 12OX439390.1n/an/a0
Chromosome 13OX439391.1n/an/a0
Chromosome 14OX439392.1n/an/a0
Chromosome 15OX439393.1n/an/a0
Chromosome 16OX439394.1n/an/a0
Chromosome 17OX439395.1n/an/a0
Chromosome 18OX439396.1n/an/a0
Chromosome ZOX439379.1n/an/a0
unplacedn/an/an/a161

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All428,770,458180428,627,45824,231,1877150
Chromosome 140,238,452140,224,65240,238,452690
Chromosome 233,390,203133,380,80333,390,203470
Chromosome 333,163,873133,154,27333,163,873480
Chromosome 430,596,237130,584,83730,596,237570
Chromosome 526,572,478126,561,87826,572,478530
Chromosome 624,231,187124,221,58724,231,187480
Chromosome 722,638,348122,630,14822,638,348410
Chromosome 819,792,379119,785,77919,792,379330
Chromosome 917,776,380117,769,78017,776,380330
Chromosome 1017,063,444117,059,04417,063,444220
Chromosome 1116,826,459116,819,65916,826,459340
Chromosome 1216,739,660116,736,66016,739,660150
Chromosome 1316,562,620116,555,02016,562,620380
Chromosome 1416,128,696116,124,89616,128,696190
Chromosome 1516,096,104116,090,70416,096,104270
Chromosome 1615,286,053115,283,25315,286,053140
Chromosome 1714,817,500114,811,70014,817,500290
Chromosome 1812,801,493112,796,29312,801,493260
Chromosome Z33,473,024133,461,22433,473,024590
unplaced4,575,8681614,575,26838,27430
MoleculeTotal
Length
Mitochondrion MT16,307