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IDs: 15661271 [UID] 40236238 [GenBank]
The assembly daLinVulg1.1 is based on 28x PacBio data and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation ... with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial and chloroplast genomes were assembled using MBG from PacBio HiFi reads mapping to related genomes. A representative circular sequence was selected for each from the graph based on read coverage. Finally, the primary assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. more
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