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ilMicArun2.1

Organism name:
Micropterix aruncella (moths)
BioSample:
SAMEA10978742
BioProject:
PRJEB53845
Submitter:
WELLCOME SANGER INSTITUTE
Date:
2022/07/13
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_944548615.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CALYMY01
Genome coverage:
18x
Linked assembly:
GCA_944547385.1 (alternate pseudohaplotype of diploid)

IDs: 13275461 [UID] 34676108 [GenBank]

See Genome Information for Micropterix aruncella

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The assembly ilMicArun2.1 is based on 18x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation ... with Hifiasm, retained haplotig separation with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. Finally, the primary assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length1,079,211,800
Total ungapped length1,078,570,600
Gaps between scaffolds0
Number of scaffolds827
Scaffold N5035,295,981
Scaffold L5013
Number of contigs4,033
Contig N50540,406
Contig L50571
Total number of chromosomes and plasmids32
Number of component sequences (WGS or clone)827

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_944548614.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1OX155950.1n/an/a0
Chromosome 2OX155951.1n/an/a0
Chromosome 3OX155952.1n/an/a0
Chromosome 4OX155953.1n/an/a0
Chromosome 5OX155954.1n/an/a0
Chromosome 6OX155955.1n/an/a0
Chromosome 7OX155956.1n/an/a0
Chromosome 8OX155957.1n/an/a0
Chromosome 9OX155958.1n/an/a1
Chromosome 10OX155959.1n/an/a1
Chromosome 11OX155960.1n/an/a0
Chromosome 12OX155961.1n/an/a2
Chromosome 13OX155962.1n/an/a1
Chromosome 14OX155963.1n/an/a0
Chromosome 15OX155964.1n/an/a0
Chromosome 16OX155965.1n/an/a1
Chromosome 17OX155966.1n/an/a0
Chromosome 18OX155967.1n/an/a5
Chromosome 19OX155968.1n/an/a0
Chromosome 20OX155969.1n/an/a0
Chromosome 21OX155970.1n/an/a0
Chromosome 22OX155971.1n/an/a0
Chromosome 23OX155972.1n/an/a0
Chromosome 24OX155973.1n/an/a0
Chromosome 25OX155974.1n/an/a0
Chromosome 26OX155975.1n/an/a4
Chromosome 27OX155976.1n/an/a0
Chromosome 28OX155977.1n/an/a0
Chromosome 29OX155978.1n/an/a1
Chromosome 30OX155979.1n/an/a4
Chromosome ZOX155980.1n/an/a8
unplacedn/an/an/a767

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,079,196,8238261,078,555,62335,295,9813,2060
Chromosome 1Assembled molecule42,645,844142,621,24442,645,8441230
Chromosome 2Assembled molecule42,439,319142,416,71942,439,3191130
Chromosome 3Assembled molecule42,263,399142,239,19942,263,3991210
Chromosome 4Assembled molecule40,563,004140,539,20440,563,0041190
Chromosome 5Assembled molecule39,158,380139,142,18039,158,380810
Chromosome 6Assembled molecule39,141,337139,119,13739,141,3371110
Chromosome 7Assembled molecule37,962,702137,941,70237,962,7021050
Chromosome 8Assembled molecule37,372,150137,353,15037,372,150950
Chromosome 9AllAssembled moleculeUnlocalized scaffolds36,895,95736,793,811102,14621136,870,95736,768,811102,14636,793,81136,793,811102,1461251250000
Chromosome 10AllAssembled moleculeUnlocalized scaffolds36,840,75736,753,16587,59221136,819,95736,732,36587,59236,753,16536,753,16587,5921041040000
Chromosome 11Assembled molecule35,920,917135,901,31735,920,917980
Chromosome 12AllAssembled moleculeUnlocalized scaffolds35,431,51535,295,981135,53431235,408,51535,272,981135,53435,295,98135,295,98168,9691151150000
Chromosome 13AllAssembled moleculeUnlocalized scaffolds34,492,66534,314,947177,71821134,475,46534,297,947177,51834,314,94734,314,947177,71886851000
Chromosome 14Assembled molecule33,762,414133,742,01433,762,4141020
Chromosome 15Assembled molecule33,696,816133,679,21633,696,816880
Chromosome 16AllAssembled moleculeUnlocalized scaffolds33,610,91133,509,601101,31021133,593,51133,492,201101,31033,509,60133,509,601101,31087870000
Chromosome 17Assembled molecule33,388,117133,368,91733,388,117960
Chromosome 18AllAssembled moleculeUnlocalized scaffolds33,125,41132,428,511696,90061533,111,61132,414,911696,70032,428,51132,428,511159,76569681000
Chromosome 19Assembled molecule29,160,722129,144,72229,160,722800
Chromosome 20Assembled molecule29,098,056129,081,85629,098,056810
Chromosome 21Assembled molecule28,596,448128,582,04828,596,448720
Chromosome 22Assembled molecule28,548,650128,531,25028,548,650870
Chromosome 23Assembled molecule24,802,010124,784,81024,802,010860
Chromosome 24Assembled molecule24,622,624124,610,22424,622,624620
Chromosome 25Assembled molecule21,751,953121,745,95321,751,953300
Chromosome 26AllAssembled moleculeUnlocalized scaffolds21,423,38920,686,457736,93251421,409,58920,672,857736,73220,686,45720,686,457197,67469681000
Chromosome 27Assembled molecule20,073,628120,064,22820,073,628470
Chromosome 28Assembled molecule18,166,079118,158,07918,166,079400
Chromosome 29AllAssembled moleculeUnlocalized scaffolds17,987,63417,818,734168,90021117,979,23417,810,334168,90017,818,73417,818,734168,90042420000
Chromosome 30AllAssembled moleculeUnlocalized scaffolds15,778,41015,335,885442,52551415,773,01015,330,485442,52515,335,88515,335,885124,29927270000
Chromosome ZAllAssembled moleculeUnlocalized scaffolds86,898,80985,726,8091,172,00091886,771,40985,600,4091,171,00085,726,80985,726,809166,1296376325000
unplacedAssembled molecule43,576,79676743,575,19695,43480
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT14,977114,97714,97700