tdSchMatt1.2

Organism name:: Schistosoma mattheei (flatworms)
BioSample:: SAMEA110148359
BioProject:: PRJEB44434
Submitter:: WELLCOME SANGER INSTITUTE
Date:: 2022/09/20
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_944470405.2 (latest)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
WGS Project:: CALYCQ02
Genome coverage:: 130x

IDs: 15861021 [UID] 40708148 [GenBank]

See Genome Information for Schistosoma mattheei

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_944470405.2	n/a	n/a	tdSchMatt1.2	Chromosome	Latest GenBank
GCA_944470405.1	n/a	n/a	tdSchMatt1.1	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	389,351,336
Total ungapped length	389,225,232
Gaps between scaffolds	0
Number of scaffolds	98
Scaffold N50	48,524,730
Scaffold L50	3
Number of contigs	512
Contig N50	2,226,626
Contig L50	52
Total number of chromosomes and plasmids	9
Number of component sequences (WGS or clone)	98

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	OX103947.1	n/a	n/a	0
Chromosome 2	OX103951.1	n/a	n/a	0
Chromosome 3	OX103945.1	n/a	n/a	0
Chromosome 4	OX103944.1	n/a	n/a	0
Chromosome 5	OX103946.1	n/a	n/a	0
Chromosome 6	OX103948.1	n/a	n/a	0
Chromosome 7	OX103950.1	n/a	n/a	0
Chromosome Z	OX103943.1	n/a	n/a	0
unplaced	n/a	n/a	n/a	89

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	389,320,734	97	389,194,630	48,524,730	414
Chromosome 1	91,893,546	1	91,858,401	91,893,546	97
Chromosome 2	47,343,082	1	47,325,102	47,343,082	112
Chromosome 3	48,524,730	1	48,508,660	48,524,730	42
Chromosome 4	45,846,863	1	45,837,121	45,846,863	30
Chromosome 5	21,825,532	1	21,816,549	21,825,532	25
Chromosome 6	25,138,605	1	25,132,104	25,138,605	20
Chromosome 7	18,411,137	1	18,403,425	18,411,137	26
Chromosome Z	88,233,033	1	88,209,062	88,233,033	62
unplaced	2,104,206	89	2,104,206	30,411	0

Assembly

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tdSchMatt1.2

See Genome Information for Schistosoma mattheei

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear