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IDs: 12881371 [UID] 33647558 [GenBank] 34501458 [RefSeq]
The assembly mOrcOrc1.1 is based on 34x PacBio data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/) and Hi-C data made publicly available by DNA Zoo (https://dnazoo.org); PMID:28336562. The assembly process included the following sequence of steps: initial ... PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Order and orientation of scaffolds in a repetitive region of chromosome 17 ( 33.6Mb) is uncertain. more
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