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ilApoLuen1.1

Organism name:
Aporophyla lueneburgensis (moths)
BioSample:
SAMEA8603194
BioProject:
PRJEB51288
Submitter:
WELLCOME SANGER INSTITUTE
Date:
2022/03/11
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_932294355.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CAKOAL01
Genome coverage:
34x
Linked assembly:
GCA_932294405.1 (alternate pseudohaplotype of diploid)

IDs: 12313021 [UID] 32252888 [GenBank]

See Genome Information for Aporophyla lueneburgensis

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The assembly ilApoLuen1.1 is based on 34x PacBio data and Arima2 Hi-C data generated by the Darwin Tree of Life Project
(https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation ... with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length978,307,447
Total ungapped length978,296,047
Gaps between scaffolds0
Number of scaffolds77
Scaffold N5032,091,479
Scaffold L5014
Number of contigs134
Contig N5020,064,200
Contig L5018
Total number of chromosomes and plasmids32
Number of component sequences (WGS or clone)77

Supplemental Content

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_932294354.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1OW028734.1n/an/a1
Chromosome 2OW028735.1n/an/a0
Chromosome 3OW028736.1n/an/a0
Chromosome 4OW028737.1n/an/a0
Chromosome 5OW028738.1n/an/a0
Chromosome 6OW028739.1n/an/a0
Chromosome 7OW028740.1n/an/a0
Chromosome 8OW028741.1n/an/a0
Chromosome 9OW028742.1n/an/a0
Chromosome 10OW028743.1n/an/a0
Chromosome 11OW028744.1n/an/a0
Chromosome 12OW028745.1n/an/a0
Chromosome 13OW028746.1n/an/a0
Chromosome 14OW028747.1n/an/a0
Chromosome 15OW028748.1n/an/a0
Chromosome 16OW028749.1n/an/a0
Chromosome 17OW028750.1n/an/a0
Chromosome 18OW028751.1n/an/a0
Chromosome 19OW028752.1n/an/a0
Chromosome 20OW028753.1n/an/a0
Chromosome 21OW028754.1n/an/a0
Chromosome 22OW028755.1n/an/a0
Chromosome 23OW028756.1n/an/a0
Chromosome 24OW028757.1n/an/a0
Chromosome 25OW028758.1n/an/a0
Chromosome 26OW028759.1n/an/a0
Chromosome 27OW028760.1n/an/a0
Chromosome 28OW028761.1n/an/a0
Chromosome 29OW028762.1n/an/a3
Chromosome 30OW028763.1n/an/a2
Chromosome ZOW028733.1n/an/a0
unplacedn/an/an/a39

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule978,291,91476978,280,51432,091,479570
Chromosome 1AllAssembled moleculeUnlocalized scaffolds46,395,92446,326,64869,27621146,395,52446,326,24869,27646,326,64846,326,64869,276220000
Chromosome 2Assembled molecule39,954,520139,953,92039,954,52030
Chromosome 3Assembled molecule38,889,971138,889,37138,889,97130
Chromosome 4Assembled molecule36,011,775136,010,77536,011,77550
Chromosome 5Assembled molecule35,500,129135,499,92935,500,12910
Chromosome 6Assembled molecule35,287,958135,287,95835,287,95800
Chromosome 7Assembled molecule35,106,766135,105,96635,106,76640
Chromosome 8Assembled molecule34,440,966134,440,76634,440,96610
Chromosome 9Assembled molecule34,141,311134,140,91134,141,31120
Chromosome 10Assembled molecule33,854,838133,854,03833,854,83840
Chromosome 11Assembled molecule32,409,420132,409,42032,409,42000
Chromosome 12Assembled molecule32,213,834132,213,23432,213,83430
Chromosome 13Assembled molecule32,091,479132,091,27932,091,47910
Chromosome 14Assembled molecule31,889,202131,889,20231,889,20200
Chromosome 15Assembled molecule31,641,059131,641,05931,641,05900
Chromosome 16Assembled molecule31,614,659131,614,45931,614,65910
Chromosome 17Assembled molecule31,465,567131,465,16731,465,56720
Chromosome 18Assembled molecule30,756,914130,756,31430,756,91430
Chromosome 19Assembled molecule30,739,040130,738,44030,739,04030
Chromosome 20Assembled molecule30,703,409130,703,40930,703,40900
Chromosome 21Assembled molecule29,039,451129,039,25129,039,45110
Chromosome 22Assembled molecule27,843,261127,842,66127,843,26130
Chromosome 23Assembled molecule27,543,701127,543,10127,543,70130
Chromosome 24Assembled molecule26,911,615126,911,61526,911,61500
Chromosome 25Assembled molecule26,238,907126,238,70726,238,90710
Chromosome 26Assembled molecule23,324,438123,324,23823,324,43810
Chromosome 27Assembled molecule21,749,117121,749,11721,749,11700
Chromosome 28Assembled molecule18,380,550118,380,35018,380,55010
Chromosome 29AllAssembled moleculeUnlocalized scaffolds18,361,40517,877,202484,20341318,361,40517,877,202484,20317,877,20217,877,202253,692000000
Chromosome 30AllAssembled moleculeUnlocalized scaffolds17,879,64817,767,531112,11731217,879,04817,766,931112,11717,767,53117,767,53167,901330000
Chromosome ZAssembled molecule47,305,837147,304,83747,305,83750
unplacedAssembled molecule8,605,243398,605,043554,34610
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT15,533115,53315,53300