U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ilLasMege1.1

Organism name:
Lasiommata megera (wall brown)
BioSample:
SAMEA7523153
BioProject:
PRJEB50440
Submitter:
WELLCOME SANGER INSTITUTE
Date:
2022/02/01
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_928268935.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CAKMRP01
Genome coverage:
45x
Linked assembly:
GCA_928267235.1 (alternate pseudohaplotype of diploid)

IDs: 11960961 [UID] 31423268 [GenBank]

See Genome Information for Lasiommata megera

Pathogen Detection Resources

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

The assembly ilLasMege1.1 is based on 45x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation ... with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length488,457,974
Total ungapped length488,454,474
Gaps between scaffolds0
Number of scaffolds44
Scaffold N5017,836,388
Scaffold L5013
Number of contigs60
Contig N5017,824,849
Contig L5013
Total number of chromosomes and plasmids31
Number of component sequences (WGS or clone)44

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_928268934.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1OV743308.1n/an/a0
Chromosome 2OV743309.1n/an/a0
Chromosome 3OV743310.1n/an/a0
Chromosome 4OV743311.1n/an/a0
Chromosome 5OV743312.1n/an/a0
Chromosome 6OV743313.1n/an/a0
Chromosome 7OV743314.1n/an/a0
Chromosome 8OV743315.1n/an/a0
Chromosome 9OV743316.1n/an/a0
Chromosome 10OV743317.1n/an/a0
Chromosome 11OV743318.1n/an/a0
Chromosome 12OV743319.1n/an/a0
Chromosome 13OV743320.1n/an/a0
Chromosome 14OV743321.1n/an/a0
Chromosome 15OV743322.1n/an/a0
Chromosome 16OV743323.1n/an/a0
Chromosome 17OV743324.1n/an/a0
Chromosome 18OV743325.1n/an/a0
Chromosome 19OV743326.1n/an/a0
Chromosome 20OV743327.1n/an/a0
Chromosome 21OV743328.1n/an/a0
Chromosome 22OV743329.1n/an/a0
Chromosome 23OV743330.1n/an/a0
Chromosome 24OV743331.1n/an/a0
Chromosome 25OV743332.1n/an/a0
Chromosome 26OV743333.1n/an/a0
Chromosome 27OV743334.1n/an/a0
Chromosome 28OV743335.1n/an/a3
Chromosome WOV743336.1n/an/a5
Chromosome ZOV743307.1n/an/a0
unplacedn/an/an/a5

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule488,442,69243488,439,19217,836,388160
Chromosome 1Assembled molecule20,703,086120,703,08620,703,08600
Chromosome 2Assembled molecule20,533,939120,533,93920,533,93900
Chromosome 3Assembled molecule19,869,684119,869,68419,869,68400
Chromosome 4Assembled molecule19,703,586119,703,58619,703,58600
Chromosome 5Assembled molecule19,550,136119,550,13619,550,13600
Chromosome 6Assembled molecule19,500,191119,500,19119,500,19100
Chromosome 7Assembled molecule19,394,976119,394,97619,394,97600
Chromosome 8Assembled molecule18,447,519118,447,51918,447,51900
Chromosome 9Assembled molecule18,304,156118,304,15618,304,15600
Chromosome 10Assembled molecule17,995,040117,995,04017,995,04000
Chromosome 11Assembled molecule17,899,916117,899,91617,899,91600
Chromosome 12Assembled molecule17,836,388117,836,18817,836,38810
Chromosome 13Assembled molecule17,824,849117,824,84917,824,84900
Chromosome 14Assembled molecule17,193,394117,193,39417,193,39400
Chromosome 15Assembled molecule17,078,381117,078,38117,078,38100
Chromosome 16Assembled molecule16,987,694116,987,69416,987,69400
Chromosome 17Assembled molecule16,915,075116,915,07516,915,07500
Chromosome 18Assembled molecule16,473,602116,473,60216,473,60200
Chromosome 19Assembled molecule15,986,163115,985,96315,986,16310
Chromosome 20Assembled molecule15,835,370115,835,37015,835,37000
Chromosome 21Assembled molecule14,396,716114,396,71614,396,71600
Chromosome 22Assembled molecule13,763,894113,763,69413,763,89410
Chromosome 23Assembled molecule12,116,190112,116,19012,116,19000
Chromosome 24Assembled molecule11,819,885111,819,88511,819,88500
Chromosome 25Assembled molecule10,637,363110,637,16310,637,36310
Chromosome 26Assembled molecule10,071,570110,070,17010,071,57070
Chromosome 27Assembled molecule9,441,50419,440,9049,441,50430
Chromosome 28AllAssembled moleculeUnlocalized scaffolds8,348,1127,994,926353,1864138,347,6127,994,426353,1867,994,9267,994,926187,738110000
Chromosome WAllAssembled moleculeUnlocalized scaffolds6,039,3852,895,0973,144,2886156,039,1852,894,8973,144,2881,657,9172,895,0971,657,917110000
Chromosome ZAssembled molecule27,639,616127,639,61627,639,61600
unplacedAssembled molecule135,3125135,31226,14800
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT15,282115,28215,28200