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SRABI122

Organism name:
Stenotrophomonas lactitubi (g-proteobacteria)
Taxonomy check:
OK
Isolate:
Bi122
BioSample:
SAMEA7892424
BioProject:
PRJEB42773
Submitter:
University of Dundee
Date:
2021/11/20
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_918697875.1 (latest)
RefSeq assembly accession:
GCF_918697875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAKKMC01
Genome coverage:
116x

IDs: 11472431 [UID] 30195308 [GenBank] 30285018 [RefSeq]

See Genome Information for Stenotrophomonas lactitubi

There are 14 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,652,813
Total ungapped length4,652,813
Number of contigs125
Contig N5066,023
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)125

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,652,8131254,652,81366,02300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Stenotrophomonas lactitubiStenotrophomonas lactitubi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002803515.1Stenotrophomonas lactitubitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002803515.1Stenotrophomonas lactitubitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.2488.4084.43
Best-match type96.2488.4084.43

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna