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MorexV3_pseudomolecules_assembly

Organism name:
Hordeum vulgare subsp. vulgare (domesticated barley)
BioSample:
SAMEA7384724
BioProject:
PRJEB40589
Submitter:
Leibniz Institute of Plant Genetics and Crop Plant Research
Date:
2021/04/01
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_904849725.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CAJHDD01
Genome coverage:
25x

IDs: 9687521 [UID] 25914238 [GenBank]

See Genome Information for Hordeum vulgare

There are 38 assemblies for this organism

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History (Show revision history)

Comment

The construction of the PacBio long-read barley Morex reference assembly proceeded in three steps: (i) scaffolding the CCS_Canu assembly (PRJEB40581) with Bionano contigs; (ii) removal of small redundant sequences; (iii) filling gaps in scaffolds with ONT_smartdenovo contigs and (iv) ... ordering and orienting scaffolds into chromosomal pseudomolecules.  more

Global statistics

Total sequence length4,225,577,519
Total ungapped length4,224,251,725
Gaps between scaffolds0
Number of scaffolds290
Scaffold N50610,333,535
Scaffold L504
Number of contigs452
Contig N5069,630,691
Contig L5015
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)290

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_904849724.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1HLR890096.1n/an/a0
Chromosome 2HLR890097.1n/an/a0
Chromosome 3HLR890098.1n/an/a0
Chromosome 4HLR890099.1n/an/a0
Chromosome 5HLR890100.1n/an/a0
Chromosome 6HLR890101.1n/an/a0
Chromosome 7HLR890102.1n/an/a0
unplacedn/an/an/a283

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All4,225,577,5192904,224,251,725610,333,5351620
Chromosome 1H516,505,9321516,367,588516,505,932170
Chromosome 2H665,585,7311665,490,063665,585,731170
Chromosome 3H621,516,5061621,218,888621,516,506300
Chromosome 4H610,333,5351609,795,818610,333,535410
Chromosome 5H588,218,6861588,167,943588,218,686170
Chromosome 6H561,794,5151561,607,832561,794,515240
Chromosome 7H632,540,5611632,521,566632,540,561140
unplaced29,082,05328329,082,027106,36020
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