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mthmo

Organism name:
Methylacidimicrobium sp. AP8 (verrucomicrobia)
Taxonomy check:
Inconclusive
Isolate:
MTHMO1
BioSample:
SAMEA6813212
BioProject:
PRJEB37308
Submitter:
RADBOUD UNIVERSITY NIJMEGEN
Date:
2020/11/19
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_903064525.1 (latest)
RefSeq assembly accession:
GCF_903064525.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
200x

IDs: 8618631 [UID] 23368378 [GenBank] 24750598 [RefSeq]

See Genome Information for Methylacidimicrobium sp. AP8

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/27/2021 19:06:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,150
CDSs (total)::2,097
Genes (coding)::1,976
CDSs (with protein)::1,976
Genes (RNA)::53
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::4
Pseudo Genes (total)::121
CDSs (without protein)::121
Pseudo Genes (ambiguous residues)::0 of 121
Pseudo Genes (frameshifted)::71 of 121
Pseudo Genes (incomplete)::61 of 121
Pseudo Genes (internal stop)::14 of 121
Pseudo Genes (multiple problems)::24 of 121
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,300,970
Total ungapped length2,300,970
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_903064524.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR797830.1=NZ_LR797830.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,300,970

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methylacidimicrobium sp. AP8Methylacidimicrobium sp. AP8

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_902143385.2Methylacidimicrobium cyclopophantestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.308.778.86

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena
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