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RJ19

Organism name:
Candidatus Nitrosacidococcus tergens (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
NSCAC1
BioSample:
SAMEA6599654
BioProject:
PRJEB36691
Submitter:
RADBOUD UNIVERSITY NIJMEGEN
Date:
2020/09/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_902810445.1 (latest)
RefSeq assembly accession:
GCF_902810445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
250x

IDs: 8023151 [UID] 21975888 [GenBank] 23918918 [RefSeq]

See Genome Information for Candidatus Nitrosacidococcus tergens

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/15/2020 07:20:07
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,752
CDSs (total)::1,698
Genes (coding)::1,682
CDSs (with protein)::1,682
Genes (RNA)::54
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::16
CDSs (without protein)::16
Pseudo Genes (ambiguous residues)::0 of 16
Pseudo Genes (frameshifted)::8 of 16
Pseudo Genes (incomplete)::8 of 16
Pseudo Genes (internal stop)::5 of 16
Pseudo Genes (multiple problems)::4 of 16
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,811,369
Total ungapped length1,811,369
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_902810444.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR778175.1=NZ_LR778175.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,811,369

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Nitrosacidococcus tergensCandidatus Nitrosacidococcus tergens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004421105.1Nitrosococcus wardiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.410.650.29

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena
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