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PS870

Organism name:
Pseudomonas fluorescens (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
PS870
BioSample:
SAMEA5944723
BioProject:
PRJEB34261
Submitter:
JOHN INNES CENTRE, NORWICH, UK.
Date:
2019/09/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902498035.1 (latest)
RefSeq assembly accession:
GCF_902498035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABVIK01
Genome coverage:
60x

IDs: 4742841 [UID] 14129128 [GenBank] 15516928 [RefSeq]

See Genome Information for Pseudomonas fluorescens

Pathogen Detection Resources

There are 304 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length7,101,195
Total ungapped length7,100,358
Gaps between scaffolds0
Number of scaffolds111
Scaffold N50255,044
Scaffold L5010
Number of contigs114
Contig N50255,044
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)111

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced7,101,1951117,100,358255,04430

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas fluorescensPseudomonas fluorescens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003417575.1Pseudomonas fluorescenssuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900106065.1Pseudomonas mandeliitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type84.4432.9736.32
Best-match type99.0286.4487.16

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type is part of Pseudomonas; we treat this group as inconclusive