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MGYG-HGUT-01304

Organism name:
Thomasclavelia spiroformis (firmicutes)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-01304
BioSample:
SAMEA5850807
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_902373765.1 (latest)
RefSeq assembly accession:
GCF_902373765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABKNM01
Genome coverage:
10x

IDs: 4418471 [UID] 13390438 [GenBank] 13436918 [RefSeq]

See Genome Information for Thomasclavelia spiroformis

There are 31 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,507,885
Total ungapped length2,507,485
Gaps between scaffolds0
Number of scaffolds12
Scaffold N50380,632
Scaffold L503
Number of contigs16
Contig N50380,632
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)12

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,507,885122,507,485380,63240

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thomasclavelia spiroformisThomasclavelia spiroformis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154805.1Thomasclavelia spiroformis DSM 1552type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154805.1Thomasclavelia spiroformistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type100.00100.00100.00
Best-match type100.00100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna