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MGYG-HGUT-00067

Organism name:
Clostridiaceae bacterium (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-00067
BioSample:
SAMEA5849568
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_902362865.1 (latest)
RefSeq assembly accession:
GCF_902362865.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABIYE01
Genome coverage:
10x

IDs: 4417001 [UID] 13387498 [GenBank] 15735228 [RefSeq]

See Genome Information for Clostridiaceae bacterium

Pathogen Detection Resources

There are 466 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,714,607
Total ungapped length3,710,132
Gaps between scaffolds0
Number of scaffolds66
Scaffold N50108,023
Scaffold L509
Number of contigs83
Contig N5093,953
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)66

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,714,607663,710,132108,023170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridiaceae bacteriumClostridiaceae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025567385.1Dorea acetigenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type100.00100.00100.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly