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26045_1#287

Organism name:
Enterobacter hormaechei (CDC Enteric Group 75)
Taxonomy check:
OK
Infraspecific name:
Strain: 4928STDY7071111
BioSample:
SAMEA104567222
BioProject:
PRJEB22252
Submitter:
SC
Date:
2019/07/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902166245.1 (latest)
RefSeq assembly accession:
GCF_902166245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABHJV01
Genome coverage:
86x

IDs: 3812511 [UID] 12056508 [GenBank] 15515448 [RefSeq]

See Genome Information for Enterobacter hormaechei

There are 7129 assemblies for this organism

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History (Show revision history)

Comment

The organism was changed from 'Enterobacter cloacae' to 'Enterobacter hormaechei' in April 2020.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_902166245.1
Current Name::Enterobacter hormaechei
Previous Name::Enterobacter cloacae
Date Updated::2020-04-20
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_001729745.1
A1 Name::Enterobacter hormaechei
A1 ANI::99.2%
A1 Query Coverage::83.52%
A1 Subject Coverage::91.47%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_001997105.1
A2 Name::Enterobacter cloacae
A2 ANI::87.43%
A2 Query Coverage::76.73%
A2 Subject Coverage::72.06%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length5,124,578
Total ungapped length5,123,712
Gaps between scaffolds0
Number of scaffolds54
Scaffold N50321,822
Scaffold L506
Number of contigs60
Contig N50303,821
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)54

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,124,578545,123,712321,82260

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter hormaecheiEnterobacter hormaechei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729745.1Enterobacter hormaechei subsp. hoffmanniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729745.1Enterobacter hormaecheitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1983.5291.47
Best-match type99.1983.5291.47

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna