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25964_2#51

Organism name:
Klebsiella oxytoca (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 4928STDY7071180
BioSample:
SAMEA104567291
BioProject:
PRJEB22252
Submitter:
SC
Date:
2019/07/12
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902162875.1 (latest)
RefSeq assembly accession:
GCF_902162875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABGXC01
Genome coverage:
54x

IDs: 3806311 [UID] 12044048 [GenBank] 12150078 [RefSeq]

See Genome Information for Klebsiella oxytoca

Pathogen Detection Resources

There are 1026 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length6,334,469
Total ungapped length6,333,463
Gaps between scaffolds0
Number of scaffolds85
Scaffold N50261,626
Scaffold L507
Number of contigs93
Contig N50232,137
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)85

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced6,334,469856,333,463261,62680

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella oxytocaKlebsiella oxytoca

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900636985.1Klebsiella oxytocatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900636985.1Klebsiella oxytocatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3986.4393.44
Best-match type99.3986.4393.44

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna