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AMBR1

Organism name:
Lacticaseibacillus rhamnosus (firmicutes)
Taxonomy check:
OK
Isolate:
AMBR1
BioSample:
SAMEA5665498
BioProject:
PRJEB32716
Submitter:
UANTW
Date:
2019/07/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_901830405.1 (latest)
RefSeq assembly accession:
GCF_901830405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABFKY01
Genome coverage:
18x

IDs: 3790841 [UID] 12013068 [GenBank] 12151438 [RefSeq]

See Genome Information for Lacticaseibacillus rhamnosus

Pathogen Detection Resources

There are 633 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,969,912
Total ungapped length2,969,812
Gaps between scaffolds0
Number of scaffolds121
Scaffold N50131,496
Scaffold L508
Number of contigs122
Contig N50123,439
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)121

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,969,9121212,969,812131,49610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lacticaseibacillus rhamnosusLacticaseibacillus rhamnosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.5585.0384.50
Best-match type97.5585.0384.50

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna