U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



19944_8#165

Organism name:
Streptococcus pyogenes (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: GAS10112
BioSample:
SAMEA3918768
BioProject:
PRJEB13003
Submitter:
SC
Date:
2019/04/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_900994305.1 (latest)
RefSeq assembly accession:
GCF_900994305.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAAIZF01
Genome coverage:
100x

IDs: 2575821 [UID] 9328118 [GenBank] 9367598 [RefSeq]

See Genome Information for Streptococcus pyogenes

Pathogen Detection Resources

There are 23524 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,732,903
Total ungapped length1,732,822
Gaps between scaffolds0
Number of scaffolds30
Scaffold N50239,599
Scaffold L502
Number of contigs31
Contig N50239,599
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,732,903301,732,822239,59910

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus pyogenesStreptococcus pyogenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002055535.1Streptococcus pyogenestype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002055535.1Streptococcus pyogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8994.6885.68
Best-match type98.8994.6885.68

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna