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Source database (GenBank or RefSeq) File type

19084_8#150-2

Organism name:: Streptococcus pneumoniae (firmicutes)
Taxonomy check:: OK
Isolate:: 55896440-41bd-11e5-998e-3c4a9275d6c6
BioSample:: SAMEA3714487
BioProject:: PRJEB31141
Submitter:: WTSI
Date:: 2019/02/20
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_900693055.1 (latest)
RefSeq assembly accession:: GCF_900693055.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 147x

IDs: 2325961 [UID] 8664868 [GenBank] 8686208 [RefSeq]

See Genome Information for Streptococcus pneumoniae

Pathogen Detection Resources

There are 45874 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_900693055.1	=	GCF_900693055.1	19084_8#150-2	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/13/2024 02:54:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,180
CDSs (total)::2,127
Genes (coding)::1,946
CDSs (with protein)::1,946
Genes (RNA)::53
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::181
CDSs (without protein)::181
Pseudo Genes (ambiguous residues)::0 of 181
Pseudo Genes (frameshifted)::81 of 181
Pseudo Genes (incomplete)::94 of 181
Pseudo Genes (internal stop)::66 of 181
Pseudo Genes (multiple problems)::50 of 181
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,120,740
Total ungapped length	2,120,740
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	98.52	88.79	89.97
Best-match type	98.52	88.79	89.97

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19084_8#150-2

See Genome Information for Streptococcus pneumoniae

Pathogen Detection Resources

There are 45874 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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