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11658_1#21-2

Organism name:
Streptococcus pneumoniae (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: GPSC32 substr. ST2178
BioSample:
SAMEA2203271
BioProject:
PRJEB31141
Submitter:
WTSI
Date:
2019/02/20
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_900692595.1 (latest)
RefSeq assembly accession:
GCF_900692595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
185x

IDs: 2325501 [UID] 8663948 [GenBank] 8685808 [RefSeq]

See Genome Information for Streptococcus pneumoniae

There are 45852 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/13/2024 02:49:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,130
CDSs (total)::2,079
Genes (coding)::1,903
CDSs (with protein)::1,903
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::176
CDSs (without protein)::176
Pseudo Genes (ambiguous residues)::0 of 176
Pseudo Genes (frameshifted)::82 of 176
Pseudo Genes (incomplete)::88 of 176
Pseudo Genes (internal stop)::59 of 176
Pseudo Genes (multiple problems)::46 of 176
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,053,788
Total ungapped length2,052,464
Gaps between scaffolds0
Number of scaffolds1
Scaffold N502,053,788
Scaffold L501
Number of contigs20
Contig N50177,287
Contig L504
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900692594.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR216016.1=NZ_LR216016.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 2,053,78812,052,4642,053,788190

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus pneumoniaeStreptococcus pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001457635.1Streptococcus pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001457635.1Streptococcus pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7991.6789.13
Best-match type98.7991.6789.13

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna