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Leg_yabuuchiae_OA1-2.v1

Organism name:
Legionella yabuuchiae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: OA1-2
BioSample:
SAMEA5198072
BioProject:
PRJEB24896
Submitter:
INSTITUT PASTEUR
Date:
2019/02/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900640115.1 (latest)
RefSeq assembly accession:
GCF_900640115.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAAAIW01
Genome coverage:
60x

IDs: 2253441 [UID] 8462338 [GenBank] 8778398 [RefSeq]

See Genome Information for Legionella yabuuchiae

History (Show revision history)

Comment

Global statistics

Total sequence length2,649,555
Total ungapped length2,649,555
Number of contigs89
Contig N5088,988
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)89

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,649,555892,649,55588,98800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella yabuuchiaeLegionella yabuuchiae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900639875.1Legionella impletisolitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.5320.1321.38

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected