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Leg_nagasakiensis_JCM_15315.v1

Organism name:
Legionella nagasakiensis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 15315
BioSample:
SAMEA5198055
BioProject:
PRJEB24896
Submitter:
INSTITUT PASTEUR
Date:
2019/02/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900639915.1 (latest)
RefSeq assembly accession:
GCF_900639915.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAAAID01
Genome coverage:
26x

IDs: 2253291 [UID] 8462038 [GenBank] 8778198 [RefSeq]

See Genome Information for Legionella nagasakiensis

History (Show revision history)

Comment

Global statistics

Total sequence length2,693,561
Total ungapped length2,693,506
Gaps between scaffolds0
Number of scaffolds54
Scaffold N50182,491
Scaffold L505
Number of contigs55
Contig N50136,253
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)54

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,693,561542,693,506182,49110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella nagasakiensisLegionella nagasakiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000512355.1Legionella oakridgensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.6837.7236.63

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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