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cs10

Organism name:
Cannabis sativa (hemp)
BioSample:
SAMEA5040675
BioProject:
PRJEB29284
Submitter:
HARVARD OEB
Date:
2019/02/14
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_900626175.1 (latest)
RefSeq assembly accession:
GCF_900626175.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
UZAU01
Genome coverage:
100x

IDs: 2322731 [UID] 8658348 [GenBank] 13201128 [RefSeq]

See Genome Information for Cannabis sativa

There are 8 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length876,147,649
Total ungapped length736,579,359
Gaps between scaffolds10
Number of scaffolds221
Scaffold N5091,912,889
Scaffold L505
Number of contigs1,052
Contig N501,959,202
Contig L50102
Total number of chromosomes and plasmids11
Number of component sequences (WGS or clone)1,052

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_900626174.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1LR213627.1=NC_044370.10
Chromosome 2LR213628.1=NC_044371.10
Chromosome 3LR213629.1=NC_044372.10
Chromosome 4LR213630.1=NC_044373.10
Chromosome 5LR213631.1=NC_044374.10
Chromosome 6LR213632.1=NC_044375.10
Chromosome 7LR213633.1=NC_044376.10
Chromosome 8LR213634.1=NC_044377.10
Chromosome 9LR213635.1=NC_044378.10
Chromosome 10LR213636.1=NC_044379.10
unplacedn/an/an/a210

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All875,732,047220736,163,75791,912,88983310
Chromosome 1104,987,320186,087,369104,986,330821
Chromosome 2101,209,240173,196,915101,208,2501611
Chromosome 394,670,641177,075,55594,669,6511121
Chromosome 491,913,879177,402,57191,912,889501
Chromosome 588,181,582180,700,92788,180,5921441
Chromosome 696,346,938176,974,54296,345,948721
Chromosome 761,561,104153,389,19061,560,114511
Chromosome 879,335,105174,511,17779,334,115391
Chromosome 971,238,074160,637,51171,237,084571
Chromosome 1064,622,176154,522,01264,621,186651
unplaced21,665,98821021,665,988269,57300
MoleculeTotal
Length
Mitochondrion MT415,602
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