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18787_4#14

Organism name:
Shigella flexneri (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 4028STDY6274927
BioSample:
SAMEA3710407
BioProject:
PRJEB12097
Submitter:
SC
Date:
2018/06/29
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_900485905.1 (latest)
RefSeq assembly accession:
GCF_900485905.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
UDTM01
Genome coverage:
100x

IDs: 1792761 [UID] 6767848 [GenBank] 8338308 [RefSeq]

See Genome Information for Shigella flexneri

Pathogen Detection Resources

There are 15506 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length4,560,267
Total ungapped length4,557,158
Gaps between scaffolds0
Number of scaffolds329
Scaffold N5037,275
Scaffold L5040
Number of contigs345
Contig N5036,666
Contig L5041
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)329

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,560,2673294,557,15837,275160

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Shigella flexneriShigella flexneri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002950215.1Shigella flexneri 2atype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002950215.1Shigella flexneritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9796.6289.16
Best-match type99.9796.6289.16

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna