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31885_B02

Organism name:
Tatumella ptyseos (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC11468
BioSample:
SAMEA2689782
BioProject:
PRJEB6403
Submitter:
SC
Date:
2018/06/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900478715.1 (latest)
RefSeq assembly accession:
GCF_900478715.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
142x

IDs: 1770161 [UID] 6710548 [GenBank] 6723018 [RefSeq]

See Genome Information for Tatumella ptyseos

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/22/2022 03:14:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,396
CDSs (total)::3,286
Genes (coding)::2,732
CDSs (with protein)::2,732
Genes (RNA)::110
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::80
ncRNAs::8
Pseudo Genes (total)::554
CDSs (without protein)::554
Pseudo Genes (ambiguous residues)::0 of 554
Pseudo Genes (frameshifted)::503 of 554
Pseudo Genes (incomplete)::72 of 554
Pseudo Genes (internal stop)::27 of 554
Pseudo Genes (multiple problems)::43 of 554
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,588,228
Total ungapped length3,588,228
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900478714.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1LS483499.1=NZ_LS483499.1

Assembly statistics

MoleculeTotal
Length
Chromosome 13,588,228

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Tatumella ptyseosTatumella ptyseos

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000439895.1Tatumella ptyseos ATCC 33301type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000439895.1Tatumella ptyseostype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9798.3299.68
Best-match type99.9798.3299.68

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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