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mschizocarpa_assembly_v2

Organism name:
Musa schizocarpa (monocots)
BioSample:
SAMEA4655287
BioProject:
PRJEB26661
Submitter:
Genoscope
Date:
2020/11/02
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_900464855.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
UBIG03
Assembly method:
Smartdenovo
Genome coverage:
60x
Sequencing technology:
Nanopore,Illumina,Bionano

IDs: 18592791 [UID] 47528908 [GenBank]

See Genome Information for Musa schizocarpa

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length525,283,493
Total ungapped length517,486,196
Gaps between scaffolds0
Number of scaffolds194
Scaffold N5044,786,816
Scaffold L506
Number of contigs379
Contig N506,493,909
Contig L5024
Total number of chromosomes and plasmids34
Number of component sequences (WGS or clone)227

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_900464854.3)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 01LS990915.1n/an/a0
Chromosome chloro1LR890023.1n/an/a0
Chromosome mito1LR890027.1n/an/a0
Chromosome 02LS990916.1n/an/a0
Chromosome chloro2LR890024.1n/an/a0
Chromosome mito2LR890028.1n/an/a0
Chromosome 03LS990917.1n/an/a0
Chromosome chloro3LR890025.1n/an/a0
Chromosome mito3LR890029.1n/an/a0
Chromosome 04LS990918.1n/an/a0
Chromosome chloro4LR890026.1n/an/a0
Chromosome mito4LR890030.1n/an/a0
Chromosome 05LS990919.1n/an/a0
Chromosome mito5LR890031.1n/an/a0
Chromosome 06LS990921.1n/an/a0
Chromosome mito6LR890032.1n/an/a0
Chromosome 07LS990920.1n/an/a0
Chromosome mito7LR890033.1n/an/a0
Chromosome 08LS990922.1n/an/a0
Chromosome mito8LR890034.1n/an/a0
Chromosome 09LS990923.1n/an/a0
Chromosome mito9LR890035.1n/an/a0
Chromosome 10LS990924.1n/an/a0
Chromosome mito10LR890036.1n/an/a0
Chromosome 11LS990925.1n/an/a0
Chromosome mito11LR890037.1n/an/a0
Chromosome mito12LR890038.1n/an/a0
Chromosome mito13LR890039.1n/an/a0
Chromosome mito14LR890040.1n/an/a0
Chromosome mito15LR890041.1n/an/a0
Chromosome mito16LR890042.1n/an/a0
Chromosome mito17LR890043.1n/an/a0
Chromosome mito18LR890044.1n/an/a0
Chromosome mito19LR890045.1n/an/a0
unplacedn/an/an/a160

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All525,283,493194517,486,19644,786,8161850
Chromosome 0136,015,517135,041,21736,015,517230
Chromosome chloro1269,4151269,405269,41510
Chromosome mito13,761,16213,476,9443,761,16250
Chromosome 0237,237,645136,854,93737,237,645100
Chromosome chloro2206,9391206,939206,93900
Chromosome mito21,033,73611,032,7381,033,73620
Chromosome 0344,786,816144,744,08944,786,816130
Chromosome chloro3120,5901120,590120,59000
Chromosome mito3869,6291517,206869,62910
Chromosome 0449,229,766148,068,80249,229,766130
Chromosome chloro4101,2531101,253101,25300
Chromosome mito4822,0621822,042822,06220
Chromosome 0552,006,332151,136,53152,006,332180
Chromosome mito5798,0061796,666798,00620
Chromosome 0646,993,692146,518,20946,993,69260
Chromosome mito6443,1291379,007443,12910
Chromosome 0742,979,761142,079,81242,979,761160
Chromosome mito7338,2401338,240338,24000
Chromosome 0854,858,060154,417,93554,858,060300
Chromosome mito8241,3781241,378241,37800
Chromosome 0952,742,985151,586,25752,742,985210
Chromosome mito9219,6561219,656219,65600
Chromosome 1043,308,909143,103,37043,308,909100
Chromosome mito10214,4181214,418214,41800
Chromosome 1136,762,082136,554,05336,762,08260
Chromosome mito11183,4071183,407183,40700
Chromosome mito12176,7031176,703176,70300
Chromosome mito13167,7701167,770167,77000
Chromosome mito14144,4051144,405144,40500
Chromosome mito15143,3171143,317143,31700
Chromosome mito16129,8141129,814129,81400
Chromosome mito1756,070156,07056,07000
Chromosome mito1844,318144,31844,31800
Chromosome mito194,94614,9464,94600
unplaced17,871,56516017,593,752130,08850