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46837_F02

Organism name:
Staphylococcus nepalensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC10516
BioSample:
SAMEA4007826
BioProject:
PRJEB6403
Submitter:
SC
Date:
2018/08/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_900458785.1 (latest)
RefSeq assembly accession:
GCF_900458785.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
UHDY01
Genome coverage:
100x

IDs: 1849411 [UID] 6996948 [GenBank] 7028218 [RefSeq]

See Genome Information for Staphylococcus nepalensis

There are 32 assemblies for this organism

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History (Show revision history)

Comment

The organism was changed from 'Staphylococcus saprophyticus' to 'Staphylococcus nepalensis' in July 2020.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_900458785.1
Current Name::Staphylococcus nepalensis
Previous Name::Staphylococcus saprophyticus
Date Updated::2020-07-31
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_002902745.1
A1 Name::Staphylococcus nepalensis
A1 ANI::99.67%
A1 Query Coverage::89.45%
A1 Subject Coverage::89.95%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_900458885.1
A2 Name::Staphylococcus saprophyticus
A2 ANI::82.99%
A2 Query Coverage::27.43%
A2 Subject Coverage::29.63%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length2,875,662
Total ungapped length2,875,662
Number of contigs2
Contig N502,851,698
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,875,66222,875,6622,851,69800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus nepalensisStaphylococcus nepalensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900458695.1Staphylococcus nepalensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900458695.1Staphylococcus nepalensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5894.2893.93
Best-match type99.5894.2893.93

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna