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R_bromii_L2_63_validated_080218.embl.gz

Organism name:
Ruminococcus bromii L2-63 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: L2-63
BioSample:
SAMEA3138353
BioProject:
PRJEB24861
Submitter:
PipelineServices
Date:
2018/03/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_900291485.1 (latest)
RefSeq assembly accession:
GCF_900291485.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
OLKO01
Genome coverage:
20x

IDs: 1646551 [UID] 6277078 [GenBank] 6304558 [RefSeq]

See Genome Information for Ruminococcus bromii

There are 61 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,238,543
Total ungapped length2,238,543
Number of contigs40
Contig N50133,706
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)40

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,238,543402,238,543133,70600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruminococcus bromii L2-63Ruminococcus bromii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002834225.1Ruminococcus bromiisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002834225.1Ruminococcus bromiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.7474.8177.83
Best-match type94.7474.8177.83

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna
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