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S2

  • Anomalous assembly.
Organism name:
Streptomyces netropsis (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Isolate:
S2
BioSample:
SAMEA104589862
BioProject:
PRJEB24880
Submitter:
CEBITEC
Date:
2019/02/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_900290435.1 (latest)
RefSeq assembly accession:
GCF_900290435.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
OKRJ01
Genome coverage:
100x

IDs: 2322941 [UID] 8658828 [GenBank] 8684698 [RefSeq]

See Genome Information for Streptomyces netropsis

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length6,880,513
Total ungapped length6,880,513
Number of contigs20
Contig N50926,189
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)20

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,880,513206,880,513926,18900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces netropsisStreptomyces netropsis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014203545.1Streptomyces netropsistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017876625.1Streptomyces syringiumsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.2085.9273.52
Best-match type99.6097.5086.94

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type is suspected of being inaccurate