U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



IMG-taxon 2681813553 annotated assembly

Organism name:
[Luteovulum] sphaeroides subsp. megalophilum (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 18937
BioSample:
SAMN05421763
BioProject:
PRJEB21429
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2017/07/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900188265.1 (latest)
RefSeq assembly accession:
GCF_900188265.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FZOV01
Genome coverage:
206x

IDs: 1154551 [UID] 4718798 [GenBank] 4788088 [RefSeq]

See Genome Information for Cereibacter sphaeroides

Pathogen Detection Resources

There are 33 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,858,213
Total ungapped length4,857,921
Gaps between scaffolds0
Number of scaffolds41
Scaffold N50707,010
Scaffold L503
Number of contigs42
Contig N50707,010
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)41

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,858,213414,857,921707,01010

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
[Luteovulum] sphaeroides subsp. megalophilumCereibacter sphaeroides

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000012905.2Cereibacter sphaeroides 2.4.1type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000012905.2Cereibacter sphaeroidestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.9585.5490.28
Best-match type97.9585.5490.28

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna