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48450_B02

Organism name:
Legionella pneumophila (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC11985
BioSample:
SAMEA4040028
BioProject:
PRJEB6403
Submitter:
SC
Date:
2017/08/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_900186925.1 (latest)
RefSeq assembly accession:
GCF_900186925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
197x

IDs: 1180991 [UID] 4960368 [GenBank] 4963918 [RefSeq]

See Genome Information for Legionella pneumophila

There are 5728 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/12/2024 02:17:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,163
CDSs (total)::3,107
Genes (coding)::3,045
CDSs (with protein)::3,045
Genes (RNA)::56
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::43
ncRNAs::4
Pseudo Genes (total)::62
CDSs (without protein)::62
Pseudo Genes (ambiguous residues)::0 of 62
Pseudo Genes (frameshifted)::47 of 62
Pseudo Genes (incomplete)::12 of 62
Pseudo Genes (internal stop)::13 of 62
Pseudo Genes (multiple problems)::9 of 62
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,514,598
Total ungapped length3,514,598
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900186924.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1LT906452.1=NZ_LT906452.1

Assembly statistics

MoleculeTotal
Length
Chromosome 13,514,598

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella pneumophilaLegionella pneumophila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_022870105.1Legionella pneumophila subsp. pneumophilatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022870105.1Legionella pneumophilatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1185.7088.35
Best-match type97.1185.7088.35

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna