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IMG-taxon 2724679686 annotated assembly

Organism name:
Geodermatophilus aquaeductus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 46834
BioSample:
SAMN06273567
BioProject:
PRJEB20669
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2019/07/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900182545.1 (latest)
RefSeq assembly accession:
GCF_900182545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FXTJ01
Genome coverage:
87x

IDs: 3791691 [UID] 12014798 [GenBank] 12149778 [RefSeq]

See Genome Information for Geodermatophilus aquaeductus

History (Show revision history)

Comment

Global statistics

Total sequence length5,433,285
Total ungapped length5,432,948
Gaps between scaffolds0
Number of scaffolds28
Scaffold N50449,457
Scaffold L504
Number of contigs29
Contig N50449,457
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,433,285285,432,948449,45710

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Geodermatophilus aquaeductusGeodermatophilus aquaeductus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003182485.1Geodermatophilus normandiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.8869.5681.78

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected