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IMG-taxon 2708742384 annotated assembly

Organism name:
Aeromicrobium choanae (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 9H-4
BioSample:
SAMN06295964
BioProject:
PRJEB19586
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2017/03/04
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900167475.1 (latest)
RefSeq assembly accession:
GCF_900167475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
219x

IDs: 1021691 [UID] 4186878 [GenBank] 4193658 [RefSeq]

See Genome Information for Aeromicrobium choanae

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/12/2024 02:01:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,350
CDSs (total)::3,299
Genes (coding)::3,295
CDSs (with protein)::3,295
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::4
CDSs (without protein)::4
Pseudo Genes (ambiguous residues)::0 of 4
Pseudo Genes (frameshifted)::1 of 4
Pseudo Genes (incomplete)::3 of 4
Pseudo Genes (internal stop)::0 of 4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,422,026
Total ungapped length3,421,926
Gaps between scaffolds0
Number of scaffolds1
Scaffold N503,422,026
Scaffold L501
Number of contigs1
Contig N503,421,926
Contig L501
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900167474.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome ILT796768.1=NZ_LT796768.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome I3,422,02613,421,9263,422,02610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aeromicrobium choanaeAeromicrobium choanae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013868155.1Aeromicrobium phoceensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.6885.1689.12

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected