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IMG-taxon 2622736499 annotated assembly

Organism name:
Leeuwenhoekiella palythoae (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 19859
BioSample:
SAMN04487999
BioProject:
PRJEB18256
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/12/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900130045.1 (latest)
RefSeq assembly accession:
GCF_900130045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FQXT01
Genome coverage:
355x

IDs: 909641 [UID] 3776908 [GenBank] 3839948 [RefSeq]

See Genome Information for Leeuwenhoekiella palythoae

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length4,029,999
Total ungapped length4,024,625
Gaps between scaffolds0
Number of scaffolds14
Scaffold N50794,559
Scaffold L503
Number of contigs17
Contig N50600,457
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)14

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,029,999144,024,625794,55930

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Leeuwenhoekiella palythoaeLeeuwenhoekiella palythoae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004104045.1Leeuwenhoekiella palythoaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004104045.1Leeuwenhoekiella palythoaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9997.6299.67
Best-match type99.9997.6299.67

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna