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IMG-taxon 2695420935 annotated assembly

Organism name:
Psychroflexus salarius (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 25661
BioSample:
SAMN05444278
BioProject:
PRJEB18172
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/12/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900129035.1 (latest)
RefSeq assembly accession:
GCF_900129035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FQTW01
Genome coverage:
498x

IDs: 911041 [UID] 3779708 [GenBank] 3841648 [RefSeq]

See Genome Information for Psychroflexus salarius

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,534,569
Total ungapped length2,534,256
Gaps between scaffolds0
Number of scaffolds47
Scaffold N50283,648
Scaffold L503
Number of contigs48
Contig N50283,648
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)47

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,534,569472,534,256283,64810

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Psychroflexus salariusPsychroflexus salarius

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014640175.1Psychroflexus salistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.201.741.54

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected