U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



BCiconfinis_v1.0

Organism name:
Buchnera aphidicola (Cinara confinis) (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: BCiconfinis
Isolate:
2801
BioSample:
SAMEA4556315
BioProject:
PRJEB15504
Submitter:
Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)
Date:
2016/11/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_900128735.1 (latest)
RefSeq assembly accession:
GCF_900128735.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
66x

IDs: 904331 [UID] 3764968 [GenBank] 3953958 [RefSeq]

See Genome Information for Buchnera aphidicola

There are 95 assemblies for this organism

See more

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/12/2024 01:50:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::418
CDSs (total)::381
Genes (coding)::375
CDSs (with protein)::375
Genes (RNA)::37
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::31
ncRNAs::3
Pseudo Genes (total)::6
CDSs (without protein)::6
Pseudo Genes (ambiguous residues)::0 of 6
Pseudo Genes (frameshifted)::1 of 6
Pseudo Genes (incomplete)::5 of 6
Pseudo Genes (internal stop)::0 of 6
##Genome-Annotation-Data-END##

Global statistics

Total sequence length451,961
Total ungapped length451,961
Total number of chromosomes and plasmids2

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900128734.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1LT667503.1=NZ_LT667503.1
Plasmid pLeuTrpLT667504.1=NZ_LT667504.1

Assembly statistics

MoleculeTotal
Length
All451,961
Chromosome 1443,747
Plasmid pLeuTrp8,214

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Buchnera aphidicola (Cinara confinis)Buchnera aphidicola

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000007365.1Buchnera aphidicola str. Sg (Schizaphis graminum)suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000007365.1Buchnera aphidicolasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type83.681.871.32
Best-match type83.681.871.32

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena