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IMG-taxon 2622736611 annotated assembly

Organism name:
Lutibacter maritimus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 24450
BioSample:
SAMN04488006
BioProject:
PRJEB17547
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/11/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900116115.1 (latest)
RefSeq assembly accession:
GCF_900116115.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FOZP01
Genome coverage:
376x

IDs: 885151 [UID] 3710048 [GenBank] 4871728 [RefSeq]

See Genome Information for Lutibacter maritimus

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length3,484,703
Total ungapped length3,479,823
Gaps between scaffolds0
Number of scaffolds20
Scaffold N50358,088
Scaffold L504
Number of contigs25
Contig N50296,920
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)20

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,484,703203,479,823358,08850

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lutibacter maritimusLutibacter maritimus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014646675.1Lutibacter litoralistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.3622.9422.22

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected