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IMG-taxon 2675903033 annotated assembly

Organism name:
Algoriella xinjiangensis (CFB group bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: XJ109
BioSample:
SAMN05421738
BioProject:
PRJEB17121
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/11/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900115015.1 (latest)
RefSeq assembly accession:
GCF_900115015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FOUZ01
Genome coverage:
461x

IDs: 882371 [UID] 3704488 [GenBank] 4888548 [RefSeq]

See Genome Information for Algoriella xinjiangensis

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,265,911
Total ungapped length3,265,785
Gaps between scaffolds0
Number of scaffolds44
Scaffold N50209,268
Scaffold L507
Number of contigs45
Contig N50209,268
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)44

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,265,911443,265,785209,26810

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Algoriella xinjiangensisAlgoriella xinjiangensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030005555.1Empedobacter sedimentitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.7351.9752.20

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna