U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



IMG-taxon 2617270929 annotated assembly

Organism name:
Marinobacter segnicrescens (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 1.6489
BioSample:
SAMN04487962
BioProject:
PRJEB17056
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900111555.1 (latest)
RefSeq assembly accession:
GCF_900111555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FOHZ01
Genome coverage:
275x

IDs: 879401 [UID] 3698508 [GenBank] 4881548 [RefSeq]

See Genome Information for Marinobacter segnicrescens

Pathogen Detection Resources

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,218,891
Total ungapped length4,216,931
Gaps between scaffolds0
Number of scaffolds85
Scaffold N50207,185
Scaffold L507
Number of contigs89
Contig N50156,014
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)85

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,218,891854,216,931207,18540

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Marinobacter segnicrescensMarinobacter segnicrescens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023156245.1Marinobacter bryozoorumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.4271.7771.02

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected