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IMG-taxon 2639762573 annotated assembly

Organism name:
Natrinema salaciae (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 25055
BioSample:
SAMN04489841
BioProject:
PRJEB16981
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900110865.1 (latest)
RefSeq assembly accession:
GCF_900110865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FOFD01
Genome coverage:
196x

IDs: 877801 [UID] 3695318 [GenBank] 4874588 [RefSeq]

See Genome Information for Natrinema salaciae

History (Show revision history)

Comment

Global statistics

Total sequence length4,857,017
Total ungapped length4,852,629
Gaps between scaffolds0
Number of scaffolds11
Scaffold N50865,606
Scaffold L503
Number of contigs15
Contig N50702,469
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)11

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,857,017114,852,629865,60640

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Natrinema salaciaeNatrinema salaciae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_028618695.1Natrinema solitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.6435.6128.68

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected