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IMG-taxon 2617270769 annotated assembly

Organism name:
Amphibacillus marinus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 1.10434
BioSample:
SAMN04488134
BioProject:
PRJEB16933
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900110345.1 (latest)
RefSeq assembly accession:
GCF_900110345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FODJ01
Genome coverage:
343x

IDs: 879751 [UID] 3699208 [GenBank] 4879508 [RefSeq]

See Genome Information for Amphibacillus marinus

History (Show revision history)

Comment

Global statistics

Total sequence length3,468,523
Total ungapped length3,467,988
Gaps between scaffolds0
Number of scaffolds29
Scaffold N50227,437
Scaffold L505
Number of contigs32
Contig N50180,341
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)29

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,468,523293,467,988227,43730

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Amphibacillus marinusAmphibacillus marinus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900096905.1Pelagirhabdus alkalitoleranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.331.652.25

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected