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IMG-taxon 2617270898 annotated assembly

Organism name:
Haloplanus vescus (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 1.8712
BioSample:
SAMN04488065
BioProject:
PRJEB16634
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900107665.1 (latest)
RefSeq assembly accession:
GCF_900107665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FNQT01
Genome coverage:
348x

IDs: 867481 [UID] 3640318 [GenBank] 4886728 [RefSeq]

See Genome Information for Haloplanus vescus

History (Show revision history)

Comment

Global statistics

Total sequence length2,776,859
Total ungapped length2,776,504
Gaps between scaffolds0
Number of scaffolds10
Scaffold N501,435,269
Scaffold L501
Number of contigs13
Contig N50614,616
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)10

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,776,859102,776,5041,435,26930

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haloplanus vescusHaloplanus vescus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003856835.1Haloplanus aerogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.7152.8741.91

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected