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IMG-taxon 2693429897 annotated assembly

Organism name:
Allgaiera indica (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 24802
BioSample:
SAMN05444006
BioProject:
PRJEB16564
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/25
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900106675.1 (latest)
RefSeq assembly accession:
GCF_900106675.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FNOB01
Genome coverage:
181x

IDs: 868661 [UID] 3642678 [GenBank] 4883528 [RefSeq]

See Genome Information for Allgaiera indica

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,280,693
Total ungapped length4,280,579
Gaps between scaffolds0
Number of scaffolds77
Scaffold N50193,940
Scaffold L509
Number of contigs78
Contig N50193,940
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)77

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,280,693774,280,579193,94010

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Allgaiera indicaAllgaiera indica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014653075.1Allgaiera indicatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014653075.1Allgaiera indicatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.7699.60
Best-match type99.9999.7699.60

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna