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IMG-taxon 2634166282 annotated assembly

Organism name:
Pseudarthrobacter equi (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: IMMIB L-1606
BioSample:
SAMN04489743
BioProject:
PRJEB16401
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/21
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900105535.1 (latest)
RefSeq assembly accession:
GCF_900105535.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
210x

IDs: 866611 [UID] 3638568 [GenBank] 4880748 [RefSeq]

See Genome Information for Pseudarthrobacter equi

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/24/2023 11:15:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,081
CDSs (total)::4,013
Genes (coding)::3,978
CDSs (with protein)::3,978
Genes (RNA)::68
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::35
CDSs (without protein)::35
Pseudo Genes (ambiguous residues)::0 of 35
Pseudo Genes (frameshifted)::18 of 35
Pseudo Genes (incomplete)::22 of 35
Pseudo Genes (internal stop)::2 of 35
Pseudo Genes (multiple problems)::7 of 35
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,459,178
Total ungapped length4,459,078
Gaps between scaffolds0
Number of scaffolds1
Scaffold N504,459,178
Scaffold L501
Number of contigs1
Contig N504,459,078
Contig L501
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900105534.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome ILT629779.1=NZ_LT629779.1

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Chromosome I4,459,17814,459,0784,459,17810

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudarthrobacter equiPseudarthrobacter equi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900104315.1Pseudarthrobacter chlorophenolicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.3686.0876.45

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected