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IMG-taxon 2639762619 annotated assembly

Organism name:
Pseudomonas jessenii (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LMG 21605
BioSample:
SAMN04490187
BioProject:
PRJEB16381
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_900104905.1 (latest)
RefSeq assembly accession:
GCF_900104905.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FNTC01
Genome coverage:
166x

IDs: 867831 [UID] 3641018 [GenBank] 4873428 [RefSeq]

See Genome Information for Pseudomonas jessenii

There are 7 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length6,588,452
Total ungapped length6,588,452
Number of contigs2
Contig N506,243,738
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,588,45226,588,4526,243,73800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas jesseniiPseudomonas jessenii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002236115.1Pseudomonas jesseniisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002236115.1Pseudomonas jesseniisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.22100.00
Best-match type99.9999.22100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna