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IMG-taxon 2684622891 annotated assembly

Organism name:
Pricia antarctica (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 23421
BioSample:
SAMN05421636
BioProject:
PRJEB15789
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900101815.1 (latest)
RefSeq assembly accession:
GCF_900101815.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FNAO01
Genome coverage:
260x

IDs: 865711 [UID] 3636768 [GenBank] 4881648 [RefSeq]

See Genome Information for Pricia antarctica

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length4,851,997
Total ungapped length4,850,995
Gaps between scaffolds0
Number of scaffolds52
Scaffold N50450,975
Scaffold L505
Number of contigs53
Contig N50450,975
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)52

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,851,997524,850,995450,97510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pricia antarcticaPricia antarctica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009371985.2Pelagihabitans pacificustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.460.540.56

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected