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IMG-taxon 2593339225 annotated assembly

  • Anomalous assembly.
Organism name:
Ruminococcus bromii (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: YE282
BioSample:
SAMN02910441
BioProject:
PRJEB15717
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_900101355.1 (latest)
RefSeq assembly accession:
GCF_900101355.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FMUV01
Genome coverage:
548x

IDs: 862151 [UID] 3629628 [GenBank] 4888908 [RefSeq]

See Genome Information for Ruminococcus bromii

There are 61 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,539,482
Total ungapped length2,539,482
Number of contigs81
Contig N5055,028
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)81

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,539,482812,539,48255,02800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruminococcus bromiiRuminococcus bromii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002834225.1Ruminococcus bromiisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900291955.1Pseudoruminococcus massiliensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typena6.898.13
Best-match type84.531.791.87

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena
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