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CAROLI_EIJ_v1.1

Organism name:
Mus caroli (Ryukyu mouse)
Sex:
female
BioSample:
SAMEA3367631
BioProject:
PRJEB14895
Submitter:
EBI
Date:
2017/04/28
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_900094665.2 (latest)
RefSeq assembly accession:
GCF_900094665.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
FMAL02
Genome coverage:
60x

IDs: 1086031 [UID] 4428938 [GenBank] 4487398 [RefSeq]

See Genome Information for Mus caroli

History (Show revision history)

Comment

Global statistics

Total sequence length2,553,128,900
Total ungapped length2,273,100,326
Gaps between scaffolds0
Number of scaffolds3,163
Scaffold N50122,627,250
Scaffold L509
Number of contigs136,968
Contig N5030,916
Contig L5021,593
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)30,921

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_900094664.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1LT608242.1=NC_034570.11
Chromosome 2LT608244.1=NC_034571.11
Chromosome 3LT608232.1=NC_034572.11
Chromosome 4LT608246.1=NC_034573.10
Chromosome 5LT608240.1=NC_034574.10
Chromosome 6LT608245.1=NC_034575.11
Chromosome 7LT608243.1=NC_034576.10
Chromosome 8LT608237.1=NC_034577.10
Chromosome 9LT608231.1=NC_034578.10
Chromosome 10LT608233.1=NC_034579.10
Chromosome 11LT608241.1=NC_034580.10
Chromosome 12LT608234.1=NC_034581.10
Chromosome 13LT608247.1=NC_034582.10
Chromosome 14LT608238.1=NC_034583.10
Chromosome 15LT608239.1=NC_034584.10
Chromosome 16LT608236.1=NC_034585.11
Chromosome 17LT608229.1=NC_034586.10
Chromosome 18LT608235.1=NC_034587.10
Chromosome 19LT608248.1=NC_034588.10
Chromosome XLT608230.1=NC_034589.11
unplacedn/an/an/a3,136

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule2,553,112,5873,1622,273,084,013122,627,250133,8050
Chromosome 1AllAssembled moleculeUnlocalized scaffolds185,597,403185,492,789104,614211172,595,441172,494,789100,652185,492,789185,492,789104,6149,3809,3728000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds171,733,144171,410,997322,147211161,156,980160,860,818296,162171,410,997171,410,997322,1479,0178,99027000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds152,811,800152,576,986234,814211138,752,439138,526,073226,366152,576,986152,576,986234,8147,7207,70911000
Chromosome 4Assembled molecule146,158,3831131,164,570146,158,3837,6330
Chromosome 5Assembled molecule145,277,7801129,950,499145,277,7807,7110
Chromosome 6AllAssembled moleculeUnlocalized scaffolds147,775,048147,274,239500,809211122,876,032122,420,569455,463147,274,239147,274,239500,8099,1529,11834000
Chromosome 7Assembled molecule147,524,3691110,275,251147,524,3696,1670
Chromosome 8Assembled molecule120,012,4141111,079,946120,012,4147,1600
Chromosome 9Assembled molecule120,003,3531108,166,412120,003,3537,1830
Chromosome 10Assembled molecule122,627,2501115,095,791122,627,2506,2430
Chromosome 11Assembled molecule117,747,4511111,199,033117,747,4516,2150
Chromosome 12Assembled molecule114,734,182199,976,642114,734,1825,3890
Chromosome 13Assembled molecule112,758,2201101,298,768112,758,2205,2170
Chromosome 14Assembled molecule113,551,3811102,445,251113,551,3815,5180
Chromosome 15Assembled molecule97,450,195191,986,80297,450,1955,1130
Chromosome 16AllAssembled moleculeUnlocalized scaffolds92,679,24992,629,10750,14221186,955,28886,906,03649,25292,629,10792,629,10750,1424,5824,5784000
Chromosome 17Assembled molecule89,975,685178,197,27189,975,6854,5740
Chromosome 18Assembled molecule86,406,422180,665,55686,406,4224,2540
Chromosome 19Assembled molecule57,673,148152,312,30957,673,1482,7620
Chromosome XAllAssembled moleculeUnlocalized scaffolds158,506,507158,037,523468,984211118,353,234118,014,031339,203158,037,523158,037,523468,9848,8528,81735000
unplacedAssembled molecule52,109,2033,13648,580,49828,7413,9630
MoleculeTotal
Length
Mitochondrion MT16,313
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